PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01002896G0090
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family E2F/DP
Protein Properties Length: 240aa    MW: 26945.2 Da    PI: 10.4096
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01002896G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP50.33.9e-1682140671
          E2F_TDP   6 Lrlltqkflklleksee.givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      Lr + + ++++ +k+e+ g++t+ne        d+kn+rRR+YD++NVL a+++i+k ek+ei+w+g
  PH01002896G0090  82 LREMYNAVISVSKKVEAkGRTTYNE----F---DEKNIRRRVYDAFNVLIAIGVIAK-EKKEIKWMG 140
                      6777778888888888888888886....5...8899********************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-2061145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.7E-1283140IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.2E-1392140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.03E-11101141IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF1440743.14E-13147209No hitNo description
SMARTSM011380.0062147233IPR014889Transcription factor DP, C-terminal
PfamPF087811.2E-8148209IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAPPCGDAAA AASAAPDLTG LRICESSRLP PLPARGGGNA AEREEKGDKN KKGKKEKAGS  60
QRITGWGLRE YSKIAWVLMA LLREMYNAVI SVSKKVEAKG RTTYNEFDEK NIRRRVYDAF  120
NVLIAIGVIA KEKKEIKWMG LSNYRYEKIK KLEEVRKDLI NRIKNKNRLL QEIEKQFDDL  180
QNIKLRNQAL QRPAESANGI RLPFLLVKSL ATKLSHLDVP MENSIGEISP VTGGYRCYR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-1543141189PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245294e-91AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631692.11e-90PREDICTED: transcription factor-like protein DPB isoform X2
TrEMBLA0A0E0JME72e-95A0A0E0JME7_ORYPU; Uncharacterized protein
STRINGGRMZM2G462623_P015e-87(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-29Transcription factor DP